Seq2Fun Databases

• For most non-model organisms, biological understanding of study outcomes is limited to protein-coding genes with functional annotations such as KEGG pathways, Gene Ontology or PANTHER classification system. Therefore, developing Seq2Fun database to focus on functionally annotated genes such as, protein-coding genes, GOs and KOs largely meets the preferred needs of most scientists studying non-model organisms.
  
  We provide dozens of pre-built databases that can be downloaded here.
  We are also building more databases such as, plants, fungi, Protists, Arthropods, Nematodes... using JustOrthologs.
  If you want to download the databases of Seq2Fun version 1, please click here.

  Group	Species	Proteins	Ortholog	Filename*
  Animals	436	14,072,810	30,392	Animals_ko_go_s2fid.tar.gz
  Vertebrates	434	14,072,808	30,392	Vertebrates_ko_go_s2fid.tar.gz
  Mammals	170	6,991,695	19,323	Mammals_ko_go_s2fid.tar.gz
  Birds	91	2,189,089	15,537	Birds_ko_go_s2fid.tar.gz
  Reptiles	24	73,6134	15,884	Reptiles_ko_go_s2fid.tar.gz
  Amphibians	9	230,744	15,199	Amphibians_ko_go_s2fid.tar.gz
  Fishes	125	3,500,392	21,427	Fishes_ko_go_s2fid.tar.gz

• We fully support customer built database. See MANUAL 13. Custom built database.

• The following 8 databases are used for the assessment of Seq2Fun version 1 with mouse, chicken, zebrafish and roundworm datasets.
  The RNA-seq data can be download from here.

  Group	Proteins	KOs	Species	Filename
  Mammals_no_mouse	356,672	5,622	64	mammals_no_mouse.tar.gz
  Mouse	8,438	5,437	1	mouse.tar.gz
  Birds_no_chicken	81,576	4,176	23	birds_no_chicken.tar.gz
  Chicken	4,930	3,921	1	chicken.tar.gz
  Fishes_no_zebrafish	267,954	4,235	38	fishes_no_zebrafish.tar.gz
  Zebrafish	6,047	3,963	1	zebrafish.tar.gz
  Nematodes_no_roundworm	13,939	2,950	5	nematodes_no_worm.tar.gz
  Roundworm	3,081	2,391	1	worm.tar.gz