Seq2Fun Databases

• For most non-model organisms, biological understanding of study outcomes is limited to protein-coding genes with functional annotations such as KEGG pathways, Gene Ontology or PANTHER classification system. Therefore, developing Seq2Fun database to focus on functionally annotated genes such as, protein-coding genes, GOs and KOs largely meets the preferred needs of most scientists studying non-model organisms.
  
  We provide dozens (~30) of pre-built databases that can be downloaded here.
  

  Group	Species	Proteins	Ortholog	Filename	Date
  Algae	14	155495	34628	algae.tar.gz	03-02-2022
  alveolates	21	207674	48656	alveolates.tar.gz	03-02-2022
  amoebozoa	7	81844	20217	amoebozoa.tar.gz	03-02-2022
  amphibians	3	75261	9838	amphibians.tar.gz	03-02-2022
  animals	370	7150735	236447	animals.tar.gz	03-02-2022
  apicomplexans	18	93576	13823	apicomplexans.tar.gz	03-02-2022
  arthropods	119	1727651	101867	arthropods.tar.gz	03-02-2022
  ascomycetes	100	904642	93433	ascomycetes.tar.gz	03-02-2022
  basidiomycetes	33	363997	52723	basidiomycetes.tar.gz	03-02-2022
  birds	31	482205	13868	birds.tar.gz	03-02-2022
  cnidarians	9	203000	18682	cnidarians.tar.gz	03-02-2022
  crustaceans	7	154960	32225	crustaceans.tar.gz	03-02-2022
  dothideomycetes	10	123200	26288	dothideomycetes.tar.gz	03-02-2022
  eudicots	93	3180221	72086	eudicots.tar.gz	03-02-2022
  euglenozoa	9	86483	11790	euglenozoa.tar.gz	03-02-2022
  eurotiomycetes	20	196228	23006	eurotiomycetes.tar.gz	03-02-2022
  fishes	64	1736572	27327	fishes.tar.gz	03-02-2022
  flatworms	4	58181	15156	flatworms.tar.gz	03-02-2022
  fungi	138	1278312	141223	fungi.tar.gz	03-02-2022
  insects	101	1376824	60375	insects.tar.gz	03-02-2022
  leotiomycetes	5	67865	19335	leotiomycetes.tar.gz	03-02-2022
  mammals	94	1910363	32471	mammals.tar.gz	03-02-2022
  mollusks	9	206905	29992	mollusks.tar.gz	03-02-2022
  monocots	17	560027	32745	monocots.tar.gz	03-02-2022
  nematodes	6	134093	32549	nematodes.tar.gz	03-02-2022
  plants	127	3968027	128122	plants.tar.gz	03-02-2022
  protists	52	660237	126969	protists.tar.gz	03-02-2022
  reptiles	20	384584	11946	reptiles.tar.gz	03-02-2022
  saccharomycetes	36	195913	13337	saccharomycetes.tar.gz	03-02-2022
  stramenopiles	8	119746	28902	stramenopiles.tar.gz	03-02-2022
  vertebrates	212	4588985	59392	vertebrates.tar.gz	03-02-2022

  If you want to download the databases of Seq2Fun version 1, please click here.

• We fully support customer built database. See MANUAL 13. Custom built database.

• The following 8 databases are used for the assessment of Seq2Fun version 1 with mouse, chicken, zebrafish and roundworm datasets.
  The RNA-seq data can be download from here.

  Group	Proteins	KOs	Species	Filename
  Mammals_no_mouse	356,672	5,622	64	mammals_no_mouse.tar.gz
  Mouse	8,438	5,437	1	mouse.tar.gz
  Birds_no_chicken	81,576	4,176	23	birds_no_chicken.tar.gz
  Chicken	4,930	3,921	1	chicken.tar.gz
  Fishes_no_zebrafish	267,954	4,235	38	fishes_no_zebrafish.tar.gz
  Zebrafish	6,047	3,963	1	zebrafish.tar.gz
  Nematodes_no_roundworm	13,939	2,950	5	nematodes_no_worm.tar.gz
  Roundworm	3,081	2,391	1	worm.tar.gz